PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g093740.9
Common NameMTR_2g093740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 697aa    MW: 77190.2 Da    PI: 8.5073
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g093740.9genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23168269199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g  W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +
  Medtr2g093740.9 168 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVGWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGE 258
                      99****************************963.3445679************************************************..449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++++r+
  Medtr2g093740.9 259 NGELRLGIRRA 269
                      9999****996 PP

2Auxin_resp119.62.4e-39294376182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                      +a+a+s ks+F+v+Y+Pras+++Fvv+++k+ k+++++v++G+Rfkm+fe+++s+err+ sG+v+g+sdldp++Wp+SkWr+L
  Medtr2g093740.9 294 VANAISAKSMFHVFYSPRASHADFVVPYQKYAKSIRNPVTIGTRFKMKFEMDESPERRCsSGIVTGMSDLDPYKWPKSKWRCL 376
                      689********************************************************9**********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-43164278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-39165280IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-21166268No hitNo description
SMARTSM010198.9E-23168270IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943168270IPR003340B3 DNA binding domain
PfamPF023622.8E-21168269IPR003340B3 DNA binding domain
PfamPF065072.7E-33294376IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MEIDLNDSIT EVKKNVCSNG KCEKSVCCVC TLSSSSSPTC SSSSSTSAIV SSSYLELWHA  60
CAGPLTSLPK KGNVVVYFPQ GHLEQVASLS LFSSLEIPTY GLQPQILCRV VNVQLLANKE  120
NDEVYTQVAL LPQAELAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH  180
GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVGWKF RHIYRGQPRR HLLTTGWSIF  240
VSQKNLVSGD AVLFLRGENG ELRLGIRRAA RPRNGLPESI IGNQSCSPSF LSSVANAISA  300
KSMFHVFYSP RASHADFVVP YQKYAKSIRN PVTIGTRFKM KFEMDESPER RCSSGIVTGM  360
SDLDPYKWPK SKWRCLMVRW DEDIGANHQD RVSPWEIDPS TSLPPLNIQS SRRLKKLRTG  420
LHVESPSHFI TAGDSGFMDF DESIRSSKVL QGQEKTSFMS LYYGCDTVTK QKEFDINSLR  480
HTNLASNGAR KITSSEFTRI QPSSYADFTE MNRFPRVLQA QEIYPLRSLT GKVDLNLNSW  540
GKTNVSYTKY NLHNATKLNF HSLGSEVLQN SSFPYGDIHK VGQGSSMLCS KPTNFQLGNV  600
SFNTPSSQIG ALRNEVGLSS FKIRNEQKLQ NDISAATSLD ANIRISNDEN FKEMVNPCKL  660
FGFSLSAAAE TTSQNLQNSA KRSCTKVSDD SNRVIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_B1e-1215640222357Auxin response factor 1
4ldy_A1e-1215640222357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1508910.0AC150891.3 Medicago truncatula chromosome 2 clone mth2-76a9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465278.10.0auxin response factor-like protein
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A072VCZ30.0A0A072VCZ3_MEDTR; Auxin response factor
STRINGGLYMA12G29280.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]